halophFGD

Basic Information

Locus ID: CH01.2785

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: A Receptor for Ubiquitination Targets

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH01	25197130	25199913	-	CH01.2785

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.96	70,561.35 Da	55.02	71.43	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	15	51	1.3E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	8	64	3.66E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	14	52	1.8E-7	-
SMART	SM00256	fbox_2	16	56	1.8E-7	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G65850.1	F-box and associated interaction domains-containing protein.	4.44E-8
RefSeq	XP_021313616.1	F-box protein At5g65850-like [Sorghum bicolor]	2.28E-82
Swiss-Prot	Q9FHP3	F-box protein At5g65850 OS=Arabidopsis thaliana OX=3702 GN=At5g65850 PE=2 SV=1	4.4E-7
TrEMBL	A0A8T0MMM4	F-box domain-containing protein (Fragment) OS=Panicum virgatum OX=38727 GN=PVAP13_9NG406400 PE=4 SV=1	4.59E-111

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.129.V1.1, AsparagusV1_04.132.V1.1
Poaceae	Echinochloa crus-galli	12	AH01.2284, AH01.2287, AH02.3093, BH01.2576, BH01.2577 ... BH01.2600, BH01.2606, BH06.2373, BH06.2374, BH08.484, CH01.2781, CH01.2785
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0112950.1.CDS1 ... HORVU.MOREX.r3.5HG0509830.1.CDS1, HORVU.MOREX.r3.5HG0509860.1.CDS1, HORVU.MOREX.r3.6HG0540080.1.CDS1, HORVU.MOREX.r3.6HG0631840.1.CDS1
Poaceae	Lolium multiflorum	23	gene-QYE76_000501, gene-QYE76_002124, gene-QYE76_005967 ... gene-QYE76_014992, gene-QYE76_018899, gene-QYE76_023242, gene-QYE76_023243, gene-QYE76_025428, gene-QYE76_025429, gene-QYE76_035401, gene-QYE76_047095, gene-QYE76_056057, gene-QYE76_058287, gene-QYE76_061402, gene-QYE76_063367, gene-QYE76_063958, gene-QYE76_065546, gene-QYE76_067195, gene-QYE76_068002, gene-QYE76_068005, gene-QYE76_071518, gene-QYE76_071649, gene-QYE76_071650
Poaceae	Oryza coarctata	2	Oco09G017100, Oco09G017160
Poaceae	Oryza sativa	1	LOC_Os05g49450.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G236300
Poaceae	Puccinellia tenuiflora	14	Pt_Chr0100309, Pt_Chr0100311, Pt_Chr0100312, Pt_Chr0100314 ... Pt_Chr0100315, Pt_Chr0100317, Pt_Chr0100318, Pt_Chr0100321, Pt_Chr0100542, Pt_Chr0102698, Pt_Chr0200532, Pt_Chr0504632, Pt_Chr0600920, Pt_Chr0700610
Poaceae	Thinopyrum elongatum	6	Tel2E01G288800, Tel3E01G766900, Tel4E01G067300 ... Tel4E01G067500, Tel4E01G600200, Tel5E01G590100
Poaceae	Triticum aestivum	16	TraesCS2A02G142000.1, TraesCS2A02G551700.1.cds1 ... TraesCS2A02G567200.1.cds1, TraesCS2B02G167200.1.cds1, TraesCS2D02G127900.1.cds1, TraesCS3B02G520900.1, TraesCS3D02G472500.1.cds1, TraesCS4B02G034200.1.cds1, TraesCS5B02G387400.1.cds1, TraesCS5D02G379400.1.cds1, TraesCS6B02G000800.1.cds1, TraesCS6B02G009900.1.cds1, TraesCS6B02G042700.1.cds1, TraesCS6B02G042800.1.cds1, TraesCS6D02G006100.1.cds1, TraesCS6D02G034300.1.cds1