Basic Information
Locus ID:
CH01.2740
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 24740596 | 24741903 | + | CH01.2740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 45,720.38 Da | 61.76 | 84.14 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 134 | 177 | 2.70856E-16 | - |
| Pfam | PF13639 | Ring finger domain | 134 | 177 | 3.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 181 | 1.14E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 185 | 2.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 135 | 176 | 3.9E-7 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 23 | 5.0 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 177 | 12.813844 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 268 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20030.1 | RING/U-box superfamily protein. | 8.68E-51 |
| RefSeq | XP_004960965.2 | putative RING-H2 finger protein ATL12 [Setaria italica] | 1.72E-182 |
| Q9SL78 | Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1 | 8.43E-50 | |
| TrEMBL | A0A3L6RAL5 | Putative RING-H2 finger protein ATL12 OS=Panicum miliaceum OX=4540 GN=C2845_PM06G03530 PE=4 SV=1 | 1.14E-181 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology