Basic Information
Locus ID:
CH01.2736
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 24720710 | 24725239 | - | CH01.2736 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 108,821.89 Da | 36.52 | 101.59 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 40 | 80 | 1.1E-4 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 523 | 561 | 1.8E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 731 | 1011 | 9.5E-36 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 188 | 208 | 0.0073 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 732 | 1030 | 4.37E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 67 | 244 | 2.72E-35 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 382 | 633 | 2.04E-52 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 185 | 468 | 6.12E-65 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 815 | 1019 | 1.2E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 153 | 248 | 2.1E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 249 | 346 | 2.5E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 347 | 641 | 1.8E-85 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 716 | 814 | 1.3E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 40 | 152 | 2.5E-19 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 132 | 156 | 97.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 500 | 523 | 390.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 729 | 1017 | 6.2E-25 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 259 | 283 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 307 | 331 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 355 | 379 | 53.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 210 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 524 | 548 | 25.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 729 | 1021 | 34.350578 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 864 | 876 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1016 | 1036 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1015 | 1036 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 9.5E-124 |
| RefSeq | XP_039799530.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Panicum virgatum] | 4.09E-276 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 9.24E-123 | |
| TrEMBL | A0A8T0TYI7 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG177727 PE=3 SV=1 | 9.25E-275 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology