Basic Information
Locus ID:
CH01.267
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 1996549 | 1999911 | - | CH01.267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 60,016.72 Da | 40.95 | 78.73 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 59 | 317 | 6.15184E-141 | - |
| Pfam | PF00069 | Protein kinase domain | 60 | 318 | 1.2E-73 | IPR000719 |
| Pfam | PF13833 | EF-hand domain pair | 378 | 427 | 5.3E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 436 | 499 | 8.3E-14 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 59 | 326 | 6.74E-86 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 342 | 511 | 1.11E-44 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 63 | 145 | 2.8E-28 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 327 | 501 | 1.3E-52 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 146 | 326 | 3.6E-59 | - |
| SMART | SM00220 | serkin_6 | 60 | 318 | 4.8E-100 | IPR000719 |
| SMART | SM00054 | efh_1 | 437 | 465 | 0.0013 | IPR002048 |
| SMART | SM00054 | efh_1 | 473 | 501 | 1.1E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 365 | 393 | 1.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 401 | 429 | 1.2 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 397 | 432 | 9.073802 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 361 | 396 | 16.66135 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 433 | 468 | 13.258112 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 469 | 504 | 13.871811 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 60 | 318 | 49.558765 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 482 | 494 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 180 | 192 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 410 | 422 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 374 | 386 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 66 | 89 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 446 | 458 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 9.61E-270 |
| RefSeq | XP_025794993.1 | calcium-dependent protein kinase 8 [Panicum hallii] | 0 |
| Q75GE8 | Calcium-dependent protein kinase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK8 PE=2 SV=1 | 5.9E-299 | |
| TrEMBL | A0A1E5W756 | Calcium-dependent protein kinase 8 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0005925 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology