Basic Information
Locus ID:
CH01.266
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 1986689 | 1990882 | - | CH01.266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 82,956.11 Da | 37.07 | 81.51 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 9 | 750 | 0.0 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 196 | 541 | 3.91E-56 | IPR017853 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 200 | 536 | 6.6E-13 | IPR013785 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 293 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57520.1 | seed imbibition 2. | 0 |
| RefSeq | XP_025794548.1 | probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Panicum hallii] | 0 |
| Q94A08 | Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T7BZG9 | galactinol--sucrose galactosyltransferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G039100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology