Basic Information
Locus ID:
CH01.2505
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
MDM2/MDM4 family protein binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 22317053 | 22319811 | - | CH01.2505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 22,550.30 Da | 59.33 | 62.44 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025797114.1 | E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Panicum hallii] | 7.68E-72 |
| TrEMBL | A0A2T7C6U9 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G249900 PE=4 SV=1 | 1.07E-71 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH01.2505 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0418480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_071785 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G618900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4BG062430, gene_TRIDC5AG077330 |
| Poaceae | Triticum aestivum | 5 | TraesCS4B02G380900.1, TraesCS4B02G381000.1 ... |