Basic Information
Locus ID:
CH01.245
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 1775339 | 1780297 | + | CH01.245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 72,044.12 Da | 51.76 | 51.14 | -1.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 486 | 517 | 3.8E-8 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 388 | 470 | 4.1E-16 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 388 | 470 | 2.3E-24 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 441 | - | - |
| Coils | Coil | Coil | 422 | 451 | - | - |
| Coils | Coil | Coil | 377 | 419 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 3.73E-57 |
| RefSeq | XP_025795649.1 | uncharacterized protein LOC112875862 [Panicum hallii] | 1.93E-305 |
| TrEMBL | A0A2T7BZC6 | PAPA-1 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G037000 PE=4 SV=1 | 2.98E-304 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology