Basic Information
Locus ID:
CH01.2393
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Trm112p-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 20811239 | 20812371 | - | CH01.2393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 8,560.77 Da | 37.63 | 90.37 | -0.06 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35905.1 | 6.36E-24 | |
| RefSeq | XP_039831165.1 | UPF0434 protein Mmar10_2939-like [Panicum virgatum] | 2.7E-44 |
| Q2T9V7 | Protein preY, mitochondrial OS=Bos taurus OX=9913 GN=PREY PE=3 SV=1 | 7.15E-14 | |
| TrEMBL | A0A8T0MMC6 | UPF0434 protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG323700 PE=4 SV=1 | 6.1E-43 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37371 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24139 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027241 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g134250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12624, Sbi_jg53316 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8607 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010406 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl33638 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001555, gene:ENSEOMG00000003205 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0023400, CQ.Regalona.r1.6BG0024780 |
| Apiaceae | Apium graveolens | 1 | Ag3G02088 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G002710, COCNU_10G001870 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719591, gene-LOC103721142 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G12331 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35905.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026722m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g087740.2N, BniB05g002620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0125 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0136 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g06240 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19000 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.54, evm.TU.LG02.2807 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.1946, AH01.1947, BH01.2290, BH01.2293, CH01.2393 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_017055 |
| Poaceae | Oryza coarctata | 2 | Oco19G004860, Oco20G004750 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g30300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G225700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013840, Chr13G015310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G254100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG020070, gene_TRIDC1BG025410 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G135800.1, TraesCS1B02G156400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb222710_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-57141 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16093 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.316, evm.TU.LG24.915, evm.TU.LG25.996 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.72 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-208, nbisL1-mrna-209, nbisL1-mrna-78 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14337 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5873 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1172 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006810 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616988 |
| Solanaceae | Solanum chilense | 1 | SOLCI002043500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012224 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16269 |