Basic Information
Locus ID:
CH01.2357
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the phosphoglycerate kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 20400706 | 20423477 | - | CH01.2357 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 191,756.02 Da | 41.10 | 90.87 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 23 | 272 | 6.01778E-87 | IPR001220 |
| Pfam | PF00162 | Phosphoglycerate kinase | 728 | 1089 | 2.4E-47 | IPR001576 |
| Pfam | PF00139 | Legume lectin domain | 22 | 282 | 1.3E-67 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 355 | 612 | 8.3E-35 | IPR000719 |
| Pfam | PF02390 | Putative methyltransferase | 1127 | 1298 | 2.8E-25 | IPR003358 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 22 | 272 | 4.61E-65 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 336 | 646 | 3.01E-66 | IPR011009 |
| SUPERFAMILY | SSF53748 | Phosphoglycerate kinase | 725 | 1109 | 3.93E-65 | IPR036043 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 1127 | 1301 | 2.19E-12 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 1106 | 1308 | 1.3E-45 | - |
| Gene3D | G3DSA:3.40.50.1260 | - | 884 | 1099 | 3.9E-61 | IPR015824 |
| Gene3D | G3DSA:3.40.50.1260 | - | 728 | 1105 | 3.9E-61 | IPR015824 |
| Gene3D | G3DSA:2.60.120.200 | - | 20 | 276 | 1.9E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 340 | 431 | 9.7E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 432 | 619 | 1.8E-40 | - |
| SMART | SM00220 | serkin_6 | 355 | 614 | 1.2E-24 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 355 | 614 | 29.375412 | IPR000719 |
| ProSiteProfiles | PS51625 | SAM-dependent methyltransferase TRMB-type domain profile. | 1080 | 1303 | 41.624763 | IPR003358 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 361 | 385 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 478 | 490 | - | IPR008271 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 823 | 838 | 2.3E-13 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 1026 | 1051 | 2.3E-13 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 851 | 873 | 2.3E-13 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 905 | 924 | 2.3E-13 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 882 | 904 | 2.3E-13 | IPR001576 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00710 (Carbon fixation by Calvin cycle)
map00710 (Carbon fixation by Calvin cycle)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Module:
M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate)
M00002 (Glycolysis, core module involving three-carbon compounds)
M00003 (Gluconeogenesis, oxaloacetate => fructose-6P)
M00165 (Reductive pentose phosphate cycle (Calvin cycle))
M00308 (Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P)
M00552 (D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37710.1 | receptor lectin kinase. Induced in response to Salicylic acid. | 4.68E-196 |
| RefSeq | XP_025794751.1 | uncharacterized protein LOC112875205 isoform X1 [Panicum hallii] | 0 |
| Q7XUN6 | L-type lectin-domain containing receptor kinase SIT2 OS=Oryza sativa subsp. japonica OX=39947 GN=SIT2 PE=2 SV=2 | 3.79E-225 | |
| TrEMBL | A0A2S3ILX3 | Phosphoglycerate kinase OS=Panicum hallii OX=206008 GN=PAHAL_9G236800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14980 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25359 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030458 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g161710 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006883, gene:ENSEOMG00000008075 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0018050, CQ.Regalona.r1.7BG0020340 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30273130 |
| Apiaceae | Apium graveolens | 1 | Ag2G02987 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721309 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1766.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G21770 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1355 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1387 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01050 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g06930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1481 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006323 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37234 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.1963, BH01.2258, BH01.2263, CH01.2357 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0125800, gene-QOZ80_2BG0181590 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0038640.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013191 |
| Poaceae | Oryza coarctata | 1 | Oco19G004960 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g30550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G223300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502452, Pt_Chr0502456 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G010060, Chr13G015060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G261200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG021080, gene_TRIDC1BG025560 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G140900.1, TraesCS1B02G157400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb047240_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48061 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16108 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.852, evm.TU.LG25.475 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g11900 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1536 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5238 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21004 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3924 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.533 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7705 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-358 |
| Salicaceae | Populus euphratica | 2 | populus_peu07922, populus_peu14453 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630015 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031747 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4520 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1912 |
| Zosteraceae | Zostera marina | 1 | Zosma03g32230.v3.1 |