HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: CH01.2357
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: Belongs to the phosphoglycerate kinase family
Maps and Mapping Data
Chromosome Start End Strand ID
CH01 20400706 20423477 - CH01.2357
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.98 191,756.02 Da 41.10 90.87 -0.02
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd06899 lectin_legume_LecRK_Arcelin_ConA 23 272 6.01778E-87 IPR001220
Pfam PF00162 Phosphoglycerate kinase 728 1089 2.4E-47 IPR001576
Pfam PF00139 Legume lectin domain 22 282 1.3E-67 IPR001220
Pfam PF00069 Protein kinase domain 355 612 8.3E-35 IPR000719
Pfam PF02390 Putative methyltransferase 1127 1298 2.8E-25 IPR003358
SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 22 272 4.61E-65 IPR013320
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 336 646 3.01E-66 IPR011009
SUPERFAMILY SSF53748 Phosphoglycerate kinase 725 1109 3.93E-65 IPR036043
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 1127 1301 2.19E-12 IPR029063
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 1106 1308 1.3E-45 -
Gene3D G3DSA:3.40.50.1260 - 884 1099 3.9E-61 IPR015824
Gene3D G3DSA:3.40.50.1260 - 728 1105 3.9E-61 IPR015824
Gene3D G3DSA:2.60.120.200 - 20 276 1.9E-59 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 340 431 9.7E-32 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 432 619 1.8E-40 -
SMART SM00220 serkin_6 355 614 1.2E-24 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 355 614 29.375412 IPR000719
ProSiteProfiles PS51625 SAM-dependent methyltransferase TRMB-type domain profile. 1080 1303 41.624763 IPR003358
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 361 385 - IPR017441
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 478 490 - IPR008271
PRINTS PR00477 Phosphoglycerate kinase family signature 823 838 2.3E-13 IPR001576
PRINTS PR00477 Phosphoglycerate kinase family signature 1026 1051 2.3E-13 IPR001576
PRINTS PR00477 Phosphoglycerate kinase family signature 851 873 2.3E-13 IPR001576
PRINTS PR00477 Phosphoglycerate kinase family signature 905 924 2.3E-13 IPR001576
PRINTS PR00477 Phosphoglycerate kinase family signature 882 904 2.3E-13 IPR001576
Gene Ontology
Biological Process:
GO:0006096 (glycolytic process) GO:0006400 (tRNA modification) GO:0006468 (protein phosphorylation)
Molecular Function:
GO:0004618 (phosphoglycerate kinase activity) GO:0004672 (protein kinase activity) GO:0005524 (ATP binding) GO:0008176 (tRNA (guanine(46)-N7)-methyltransferase activity) GO:0030246 (carbohydrate binding)
KEGG Pathway
KO Term:
K00927 (phosphoglycerate kinase [EC:2.7.2.3])
Pathway:
ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00710 (Carbon fixation by Calvin cycle) map00710 (Carbon fixation by Calvin cycle) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)
Module:
M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00002 (Glycolysis, core module involving three-carbon compounds) M00003 (Gluconeogenesis, oxaloacetate => fructose-6P) M00165 (Reductive pentose phosphate cycle (Calvin cycle)) M00308 (Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P) M00552 (D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P)
Reaction:
R01512 (ATP + 3-Phospho-D-glycerate <=> ADP + 3-Phospho-D-glyceroyl phosphate)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G37710.1 receptor lectin kinase. Induced in response to Salicylic acid. 4.68E-196
RefSeq XP_025794751.1 uncharacterized protein LOC112875205 isoform X1 [Panicum hallii] 0
Swiss-Prot Q7XUN6 L-type lectin-domain containing receptor kinase SIT2 OS=Oryza sativa subsp. japonica OX=39947 GN=SIT2 PE=2 SV=2 3.79E-225
TrEMBL A0A2S3ILX3 Phosphoglycerate kinase OS=Panicum hallii OX=206008 GN=PAHAL_9G236800 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 1 jg14980
Aizoaceae Mesembryanthemum crystallinum 1 gene_25359
Amaranthaceae Atriplex hortensis 1 Ah030458
Amaranthaceae Beta vulgaris 1 BVRB_7g161710
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000006883, gene:ENSEOMG00000008075 ...
gene:ENSEOMG00000036971, gene:ENSEOMG00000040777
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.7AG0018050, CQ.Regalona.r1.7BG0020340 ...
CQ.Regalona.r1.7BG0020350
Anacardiaceae Pistacia vera 1 pistato.v30273130
Apiaceae Apium graveolens 1 Ag2G02987
Arecaceae Cocos nucifera 1 COCNU_07G010790
Arecaceae Phoenix dactylifera 1 gene-LOC103721309
Asparagaceae Asparagus officinalis 1 AsparagusV1_04.1766.V1.1
Asteraceae Flaveria trinervia 1 Ftri6G21770
Casuarinaceae Casuarina equisetifolia 1 Ceq08G1355
Casuarinaceae Casuarina glauca 1 Cgl08G1387
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno17g01050
Hydrocharitaceae Thalassia testudinum 1 gene.Thate01g06930
Nitrariaceae Nitraria sibirica 1 evm.TU.LG01.1481
Plantaginaceae Plantago ovata 1 Pov_00006323
Plumbaginaceae Limonium bicolor 1 Lb0G37234
Poaceae Echinochloa crus-galli 4 AH01.1963, BH01.2258, BH01.2263, CH01.2357
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_2AG0125800, gene-QOZ80_2BG0181590
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.1HG0038640.1 ...
HORVU.MOREX.r3.5HG0448930.1.CDS1
Poaceae Lolium multiflorum 1 gene-QYE76_013191
Poaceae Oryza coarctata 1 Oco19G004960
Poaceae Oryza sativa 1 LOC_Os10g30550.1
Poaceae Paspalum vaginatum 1 gene-BS78_01G223300
Poaceae Puccinellia tenuiflora 2 Pt_Chr0502452, Pt_Chr0502456
Poaceae Sporobolus alterniflorus 2 Chr09G010060, Chr13G015060
Poaceae Thinopyrum elongatum 1 Tel1E01G261200
Poaceae Triticum dicoccoides 4 gene_TRIDC1AG021080, gene_TRIDC1BG025560 ...
gene_TRIDC2AG036180, gene_TRIDC2AG036560
Poaceae Triticum aestivum 3 TraesCS1A02G140900.1, TraesCS1B02G157400.1 ...
TraesCS1D02G139800.1
Poaceae Zea mays 1 Zm00001eb047240_P002
Poaceae Zoysia japonica 1 nbis-gene-48061
Poaceae Zoysia macrostachya 1 Zma_g16108
Portulacaceae Portulaca oleracea 2 evm.TU.LG05.852, evm.TU.LG25.475
Posidoniaceae Posidonia oceanica 1 gene.Posoc10g11900
Rhizophoraceae Bruguiera sexangula 1 evm.TU.Scaffold_1_RagTag.1536
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-5238
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-21004
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-3924
Rhizophoraceae Kandelia candel 1 evm.TU.utg000016l.533
Rhizophoraceae Kandelia obovata 1 Maker00017095
Rhizophoraceae Rhizophora apiculata 1 nbisL1-mrna-7705
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-358
Salicaceae Populus euphratica 2 populus_peu07922, populus_peu14453
Solanaceae Lycium barbarum 1 gene-LOC132630015
Solanaceae Solanum pennellii 1 gene-LOC107031747
Tamaricaceae Reaumuria soongarica 1 gene_4520
Tamaricaceae Tamarix chinensis 1 TC02G1912
Zosteraceae Zostera marina 1 Zosma03g32230.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.