Basic Information
Locus ID:
CH01.2286
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 19599010 | 19602083 | + | CH01.2286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 29,461.18 Da | 50.83 | 50.39 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 10 | 91 | 2.9E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 193 | 251 | 3.1E-27 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 145 | 188 | 9.0E-7 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 82 | 139 | 1.06E-18 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 191 | 2.41E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 6 | 80 | 8.37E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 218 | 7.8E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 219 | 256 | 1.5E-18 | - |
| SMART | SM00184 | ring_2 | 146 | 188 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 81 | 145 | 34.681499 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 3 | 79 | 24.046705 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 189 | 11.766381 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 4.64E-126 |
| RefSeq | XP_004982968.1 | E3 ubiquitin-protein ligase RZFP34 isoform X1 [Setaria italica] | 2.32E-172 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 4.46E-125 | |
| TrEMBL | K4ADV3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101765663 PE=4 SV=1 | 5.26E-171 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology