Basic Information
Locus ID:
CH01.2274
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transcriptional regulator
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 19398809 | 19425841 | - | CH01.2274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 229,862.28 Da | 47.98 | 82.58 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1713 | 1856 | 2.09295E-52 | - |
| CDD | cd11726 | ADDz_ATRX | 1090 | 1185 | 2.33636E-33 | - |
| CDD | cd00751 | thiolase | 54 | 439 | 8.48008E-177 | IPR002155 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1721 | 1845 | 2.9E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 1325 | 1640 | 3.6E-51 | IPR000330 |
| Pfam | PF00108 | Thiolase, N-terminal domain | 53 | 308 | 9.6E-76 | IPR020616 |
| Pfam | PF02803 | Thiolase, C-terminal domain | 317 | 439 | 2.9E-47 | IPR020617 |
| SUPERFAMILY | SSF53901 | Thiolase-like | 318 | 439 | 5.26E-39 | IPR016039 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1578 | 1904 | 7.4E-57 | IPR027417 |
| SUPERFAMILY | SSF53901 | Thiolase-like | 43 | 310 | 5.1E-65 | IPR016039 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1304 | 1573 | 2.36E-47 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1583 | 1929 | 8.2E-77 | IPR027417 |
| Gene3D | G3DSA:3.40.47.10 | - | 48 | 463 | 3.7E-162 | IPR016039 |
| Gene3D | G3DSA:3.40.50.10810 | - | 1289 | 1572 | 3.6E-79 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1748 | 1845 | 4.7E-15 | IPR001650 |
| SMART | SM00487 | ultradead3 | 1314 | 1535 | 5.4E-22 | IPR014001 |
| TIGRFAM | TIGR01930 | AcCoA-C-Actrans: acetyl-CoA C-acyltransferase | 55 | 438 | 3.4E-130 | IPR002155 |
| ProSiteProfiles | PS51533 | ADD domain profile. | 1080 | 1211 | 11.889551 | IPR025766 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 35 | 6.0 | - |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1340 | 1523 | 17.054266 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1722 | 1893 | 15.094956 | IPR001650 |
| ProSitePatterns | PS00737 | Thiolases signature 2. | 384 | 400 | - | IPR020613 |
| ProSitePatterns | PS00098 | Thiolases acyl-enzyme intermediate signature. | 135 | 153 | - | IPR020615 |
| ProSitePatterns | PS00099 | Thiolases active site. | 421 | 434 | - | IPR020610 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1982 | 2027 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2010 | 2027 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1209 | 1229 | - | - |
| Coils | Coil | Coil | 1951 | 1971 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08600.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_025795183.1 | protein CHROMATIN REMODELING 20 isoform X1 [Panicum hallii] | 0 |
| F4HW51 | Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2 | 0 | |
| TrEMBL | A0A2S3ILR6 | ATP-dependent helicase ATRX OS=Panicum hallii OX=206008 GN=PAHAL_9G230000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2716 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10347 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005595 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g077440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17305, Sbi_jg61941 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg561 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015470 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24355, Sgl24363, Sgl29528, Sgl29539 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009165, gene:ENSEOMG00000028688 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0006760, CQ.Regalona.r1.4BG0006890 |
| Apiaceae | Apium graveolens | 1 | Ag8G01171 |
| Arecaceae | Cocos nucifera | 1 | scaffold001442G000100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720147 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.300.V1.1, AsparagusV1_04.301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G15386 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G08600.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006555m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g07260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g004270.2N, BniB04g031090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2408 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2527 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g17930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-7901, nbisL1-mrna-7903 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2177 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012773 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06456 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.2180, CH01.2274 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0126760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040050.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011271 |
| Poaceae | Oryza coarctata | 2 | Oco19G005350, Oco20G005280 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G215300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0502490, Pt_Chr0502493, Pt_Chr0502494 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013430, Chr15G016210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G267300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG021840, gene_TRIDC1BG025970 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G144000.3, TraesCS1B02G161400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046650_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21251 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13338 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.1131 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g06480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.331 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7899 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8969 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5379 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.217 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011053 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7743 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-300 |
| Salicaceae | Populus euphratica | 4 | populus_peu15998, populus_peu19501, populus_peu25237 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616152 |
| Solanaceae | Solanum chilense | 1 | SOLCI002257600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017879 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17982 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0883 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24490.v3.1 |