Basic Information
Locus ID:
CH01.2246
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 19115956 | 19125196 | + | CH01.2246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 125,546.54 Da | 53.11 | 79.71 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01466 | vWA_C3HC4_type | 692 | 868 | 9.28347E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 258 | 2.3E-5 | IPR001680 |
| Pfam | PF00092 | von Willebrand factor type A domain | 693 | 879 | 5.8E-19 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 1044 | 1135 | 1.5E-16 | IPR032838 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 9.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 217 | 502 | 6.02E-43 | IPR036322 |
| SUPERFAMILY | SSF53300 | vWA-like | 688 | 881 | 1.04E-31 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 693 | 882 | 4.6E-45 | IPR036465 |
| Gene3D | G3DSA:2.130.10.10 | - | 210 | 516 | 1.4E-50 | IPR015943 |
| SMART | SM00327 | VWA_4 | 691 | 879 | 7.1E-25 | IPR002035 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 8.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 361 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 432 | 62.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 436 | 482 | 6.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 258 | 2.1E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 226 | 260 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 308 | 11.128319 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 267 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 693 | 881 | 15.060532 | IPR002035 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 24 | 56 | 8.3867 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1085 | 1108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1133 | 1155 | - | - |
| Coils | Coil | Coil | 1145 | 1155 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 4.12E-117 |
| RefSeq | XP_025793451.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum hallii] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 3.97E-116 | |
| TrEMBL | A0A2S3IKZ0 | VWFA domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G203000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology