Basic Information
Locus ID:
CH01.2111
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Tetratricopeptide repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 17687940 | 17693627 | + | CH01.2111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 114,213.68 Da | 54.62 | 72.29 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00515 | Tetratricopeptide repeat | 128 | 159 | 3.0E-8 | IPR001440 |
| Pfam | PF07719 | Tetratricopeptide repeat | 161 | 193 | 1.2E-5 | IPR013105 |
| Pfam | PF08268 | F-box associated domain | 857 | 948 | 1.9E-6 | IPR013187 |
| Pfam | PF00646 | F-box domain | 260 | 292 | 8.0E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 648 | 681 | 0.0047 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 648 | 692 | 3.66E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 261 | 383 | 2.35E-9 | IPR036047 |
| SUPERFAMILY | SSF48452 | TPR-like | 83 | 204 | 2.61E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 53 | 223 | 4.6E-40 | IPR011990 |
| SMART | SM00256 | fbox_2 | 648 | 685 | 7.8 | IPR001810 |
| SMART | SM00256 | fbox_2 | 255 | 295 | 0.0035 | IPR001810 |
| SMART | SM00028 | tpr_5 | 160 | 193 | 1.9E-5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 126 | 159 | 1.2E-6 | IPR019734 |
| SMART | SM00028 | tpr_5 | 85 | 118 | 20.0 | IPR019734 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 796 | 950 | 4.6E-12 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 356 | 498 | 2.2E-17 | IPR017451 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 126 | 159 | 9.1159 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 160 | 193 | 10.7679 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 87 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30480.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 4.46E-55 |
| RefSeq | XP_047071091.1 | uncharacterized protein LOC124679364 isoform X1 [Lolium rigidum] | 3.14E-174 |
| Q99614 | Tetratricopeptide repeat protein 1 OS=Homo sapiens OX=9606 GN=TTC1 PE=1 SV=1 | 6.91E-28 | |
| TrEMBL | A0A835KU87 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_003925 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology