Basic Information
Locus ID:
CH01.2086
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 17474360 | 17479669 | + | CH01.2086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 80,404.23 Da | 35.87 | 92.23 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 327 | 589 | 7.94651E-98 | - |
| Pfam | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | 702 | 753 | 5.9E-12 | IPR004038 |
| Pfam | PF01657 | Salt stress response/antifungal | 35 | 131 | 3.5E-14 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 156 | 235 | 3.6E-9 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 324 | 590 | 4.1E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 305 | 625 | 1.31E-78 | IPR011009 |
| SUPERFAMILY | SSF55315 | L30e-like | 697 | 753 | 6.87E-14 | IPR029064 |
| Gene3D | G3DSA:3.30.430.20 | - | 27 | 134 | 4.2E-19 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 398 | 604 | 7.7E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 298 | 397 | 1.6E-32 | - |
| Gene3D | G3DSA:3.30.1330.30 | - | 690 | 754 | 1.5E-19 | IPR029064 |
| Gene3D | G3DSA:3.30.430.20 | - | 144 | 238 | 1.2E-11 | IPR038408 |
| SMART | SM00220 | serkin_6 | 321 | 585 | 3.9E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 321 | 600 | 37.700336 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 139 | 238 | 15.284921 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 28 | 134 | 17.674677 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 442 | 454 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 327 | 349 | - | IPR017441 |
| ProSitePatterns | PS01189 | Ribosomal protein S12e signature. | 702 | 720 | - | IPR000530 |
| PRINTS | PR00972 | Ribosomal protein S12E family signature | 706 | 719 | 6.2E-5 | IPR000530 |
| PRINTS | PR00972 | Ribosomal protein S12E family signature | 720 | 736 | 6.2E-5 | IPR000530 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 684 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40380.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42. Encodes a cysteine-rich receptor-like protein kinase. | 1.94E-113 |
| RefSeq | XP_025798094.1 | cold-responsive protein kinase 1-like [Panicum hallii] | 0 |
| Q9FNE1 | Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana OX=3702 GN=CRK42 PE=2 SV=1 | 1.88E-112 | |
| TrEMBL | A0A4U6T0I8 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G216600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19989, jg31015, jg31016 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30189500, pistato.v30211710, pistato.v30211720 ... |
| Apiaceae | Apium graveolens | 10 | Ag1G00564, Ag1G00565, Ag1G00566, Ag1G00568, Ag1G00570 ... |
| Arecaceae | Cocos nucifera | 2 | scaffold008549G000040, scaffold011035G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696787, gene-LOC103723943 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.488.V1.1 |
| Asteraceae | Flaveria trinervia | 18 | Ftri11G14745, Ftri12G25564, Ftri13G11556, Ftri17G00417 ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0814, Ceq08G0815 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G0823, Cgl08G0825 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00940 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021177, Pov_00021179 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.2086, Contig328.93 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0128400, gene-QOZ80_2BG0183800 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0044490.1, HORVU.MOREX.r3.3HG0221160.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011667 |
| Poaceae | Oryza coarctata | 2 | Oco19G006360, Oco20G006340 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g34220.1, LOC_Os11g28104.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G199800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502615 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G011520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G291700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG024250, gene_TRIDC1BG029490 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G159500.2, TraesCS1B02G175900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb221490_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19164 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16223 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g14200, gene.Posoc06g14220 |
| Rhizophoraceae | Bruguiera sexangula | 6 | evm.TU.44380.1, evm.TU.53452.1, evm.TU.53454.1 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-16342, nbisL1-mrna-29524, nbisL1-mrna-29526 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12477, nbisL1-mrna-8445 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1184 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.879 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007051, Maker00008351 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13423, nbisL1-mrna-13424 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3890, nbisL1-mrna-3891 |
| Salicaceae | Populus euphratica | 3 | populus_peu01772, populus_peu24740, populus_peu24741 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615264, gene-LOC132616170 |
| Solanaceae | Solanum chilense | 1 | SOLCI006755500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003255 |