Basic Information
Locus ID:
CH01.2027
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 16822126 | 16824024 | + | CH01.2027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 36,126.42 Da | 38.83 | 100.37 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 164 | 236 | 1.63091E-7 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 95 | 155 | 2.0505E-14 | - |
| Pfam | PF00240 | Ubiquitin family | 15 | 81 | 1.4E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 89 | 156 | 1.0E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 244 | 308 | 1.5E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 82 | 156 | 2.69E-19 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 12 | 81 | 2.03E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 155 | 237 | 9.9E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 237 | 309 | 2.05E-12 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 83 | 162 | 2.1E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 236 | 323 | 8.7E-13 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 163 | 235 | 5.4E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 13 | 82 | 9.6E-18 | - |
| SMART | SM00213 | ubq_7 | 85 | 157 | 7.7E-15 | IPR000626 |
| SMART | SM00213 | ubq_7 | 13 | 82 | 1.5E-12 | IPR000626 |
| SMART | SM00213 | ubq_7 | 162 | 238 | 0.0022 | IPR000626 |
| SMART | SM00213 | ubq_7 | 241 | 312 | 0.32 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 241 | 307 | 10.919573 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 162 | 237 | 10.571166 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 13 | 82 | 15.971466 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 85 | 156 | 19.738609 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 21 | 41 | 3.0E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 63 | 84 | 3.0E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 42 | 62 | 3.0E-10 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 6.65E-51 |
| RefSeq | XP_039784014.1 | polyubiquitin-like [Panicum virgatum] | 3.3E-198 |
| P69309 | Polyubiquitin OS=Avena fatua OX=4499 PE=2 SV=2 | 6.44E-50 | |
| TrEMBL | A0A8T0NEQ9 | Polyubiquitin OS=Panicum virgatum OX=38727 GN=PVAP13_9KG189500 PE=4 SV=1 | 7.47E-197 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |