Basic Information
Locus ID:
CH01.2026
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 16818422 | 16821280 | + | CH01.2026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 36,275.36 Da | 34.66 | 95.20 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 93 | 153 | 7.92083E-15 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 162 | 228 | 1.81787E-9 | - |
| Pfam | PF00240 | Ubiquitin family | 93 | 154 | 2.4E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 13 | 79 | 1.8E-13 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 162 | 229 | 7.8E-7 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 234 | 302 | 3.7E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 230 | 302 | 8.71E-12 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 6 | 79 | 3.97E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 157 | 230 | 2.99E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 83 | 156 | 1.12E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 159 | 226 | 2.2E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 11 | 80 | 2.1E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 227 | 318 | 9.2E-13 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 81 | 156 | 7.0E-20 | - |
| SMART | SM00213 | ubq_7 | 83 | 155 | 1.4E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 11 | 80 | 3.9E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 231 | 302 | 0.45 | IPR000626 |
| SMART | SM00213 | ubq_7 | 160 | 230 | 1.1E-4 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 11 | 80 | 15.797262 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 160 | 227 | 13.097113 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 83 | 154 | 17.64817 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 231 | 302 | 11.986567 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 61 | 82 | 3.7E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 19 | 39 | 3.7E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 40 | 60 | 3.7E-9 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 1.44E-47 |
| RefSeq | XP_025798348.1 | polyubiquitin-like [Panicum hallii] | 2.81E-183 |
| P0CG82 | Polyubiquitin OS=Tetrahymena pyriformis OX=5908 GN=TU20 PE=3 SV=1 | 5.42E-48 | |
| TrEMBL | A0A8T0MJS7 | Polyubiquitin OS=Panicum virgatum OX=38727 GN=PVAP13_9NG304700 PE=4 SV=1 | 2.63E-180 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |