Basic Information
Locus ID:
CH01.2025
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 16809405 | 16810289 | + | CH01.2025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 33,078.97 Da | 35.02 | 103.33 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 146 | 216 | 5.61485E-8 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 77 | 137 | 3.50651E-14 | - |
| Pfam | PF00240 | Ubiquitin family | 146 | 218 | 1.3E-4 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 221 | 290 | 1.2E-8 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 71 | 138 | 1.8E-16 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 63 | 3.4E-12 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 218 | 290 | 5.86E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 142 | 218 | 8.52E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 63 | 5.86E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 64 | 138 | 2.79E-20 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 216 | 290 | 1.3E-13 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 143 | 215 | 7.2E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 63 | 2.4E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 64 | 141 | 2.0E-21 | - |
| SMART | SM00213 | ubq_7 | 144 | 218 | 2.3E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 67 | 139 | 1.8E-12 | IPR000626 |
| SMART | SM00213 | ubq_7 | 219 | 290 | 4.8E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 64 | 4.0E-5 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 64 | 14.207658 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 144 | 215 | 11.790588 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 67 | 138 | 19.82571 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 219 | 290 | 13.031787 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 99 | 119 | 2.2E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 120 | 141 | 2.2E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 78 | 98 | 2.2E-9 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 1.38E-47 |
| RefSeq | XP_025791654.1 | polyubiquitin-like [Panicum hallii] | 8.95E-146 |
| P0CG74 | Polyubiquitin OS=Candida albicans OX=5476 GN=UBI4 PE=3 SV=1 | 6.75E-47 | |
| TrEMBL | A0A0A8ZN82 | Polyubiquitin-like OS=Arundo donax OX=35708 PE=4 SV=1 | 1.05E-147 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |