Basic Information
Locus ID:
CH01.2013
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prolyl 4-hydroxylase alpha subunit homologues.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 16671471 | 16674486 | - | CH01.2013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 32,910.17 Da | 51.44 | 74.69 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13640 | 2OG-Fe(II) oxygenase superfamily | 179 | 297 | 3.5E-21 | IPR044862 |
| Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 92 | 298 | 7.6E-82 | - |
| SMART | SM00702 | p4hc | 99 | 297 | 3.7E-68 | IPR006620 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 175 | 298 | 11.996655 | IPR005123 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 85 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20270.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein. | 5.56E-140 |
| RefSeq | XP_025797707.1 | probable prolyl 4-hydroxylase 3 [Panicum hallii] | 1.77E-182 |
| Q9LN20 | Probable prolyl 4-hydroxylase 3 OS=Arabidopsis thaliana OX=3702 GN=P4H3 PE=2 SV=1 | 5.34E-139 | |
| TrEMBL | A0A2S3IL39 | Fe2OG dioxygenase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G202200 PE=4 SV=1 | 4.01E-181 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology