Basic Information
Locus ID:
CH01.1979
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 16331421 | 16345617 | + | CH01.1979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.33 | 186,657.63 Da | 69.81 | 67.85 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12854 | PPR repeat | 517 | 541 | 3.4E-7 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 627 | 650 | 2.2E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1001 | 1050 | 6.6E-16 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 587 | 618 | 1.3E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 970 | 999 | 1.8E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 941 | 961 | 0.28 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 444 | 577 | 1.9E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 579 | 652 | 2.8E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 931 | 1105 | 1.2E-34 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1004 | 1037 | 6.0E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 522 | 555 | 4.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 593 | 619 | 2.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 970 | 1003 | 7.5E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 591 | 625 | 9.569272 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 520 | 554 | 9.700809 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1002 | 1036 | 12.178061 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 967 | 1001 | 11.388848 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 555 | 590 | 9.251395 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 899 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1129 | 1152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 781 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1435 | 1457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1370 | 1461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1205 | 1226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1399 | 1432 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021307824.1 | protein Rf1, mitochondrial [Sorghum bicolor] | 1.2E-62 |
| Q76C99 | Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 | 3.26E-38 | |
| TrEMBL | C5XB23 | PPR_long domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3002G054200 PE=3 SV=2 | 2.72E-61 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology