Basic Information
Locus ID:
CH01.1931
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 15725560 | 15734409 | - | CH01.1931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 219,360.16 Da | 44.05 | 77.87 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 165 | 362 | 5.3E-35 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 9 | 102 | 4.0E-8 | IPR041118 |
| Pfam | PF03732 | Retrotransposon gag protein | 948 | 1040 | 2.4E-15 | IPR005162 |
| SUPERFAMILY | SSF52058 | L domain-like | 1350 | 1747 | 1.19E-32 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 151 | 405 | 3.14E-46 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 1675 | 1895 | 3.74E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1738 | 1904 | 7.6E-14 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 387 | 483 | 2.0E-7 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1326 | 1521 | 3.5E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1522 | 1734 | 1.5E-15 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 150 | 316 | 1.2E-32 | IPR027417 |
| PRINTS | PR00364 | Disease resistance protein signature | 186 | 201 | 6.2E-5 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 259 | 273 | 6.2E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1251 | 1280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1239 | 1291 | - | - |
| Coils | Coil | Coil | 546 | 566 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14460.1 | LRR and NB-ARC domains-containing disease resistance protein. | 6.88E-45 |
| RefSeq | XP_039826743.1 | putative disease resistance protein RGA3 [Panicum virgatum] | 0 |
| Q7XBQ9 | Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 | 1.59E-57 | |
| TrEMBL | A0A8T0MJ09 | Disease resistance protein RGA3 OS=Panicum virgatum OX=38727 GN=PVAP13_9NG328600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||