Basic Information
Locus ID:
CH01.1684
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 13519355 | 13521149 | - | CH01.1684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 22,768.30 Da | 48.66 | 58.17 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 156 | 198 | 6.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 152 | 204 | 2.33E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 208 | 4.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 158 | 198 | 3.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 158 | 198 | 12.430266 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 151 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15790.1 | RING/U-box superfamily protein. | 1.53E-27 |
| RefSeq | XP_004982470.1 | E3 ubiquitin-protein ligase At3g02290 [Setaria italica] | 6.14E-139 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 4.33E-25 | |
| TrEMBL | K4AF57 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101772672 PE=4 SV=1 | 1.39E-137 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.1083, BH01.1611, CH01.1684 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0225980, gene-QOZ80_3BG0271890 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0125040.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016282, gene-QYE76_057527 |
| Poaceae | Oryza coarctata | 2 | Oco05G017780, Oco06G018500 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g40170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G159200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0103848, Pt_Chr0103850, Pt_Chr0103872 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G010320, Chr04G014390, Chr07G022890, Chr12G026540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G331700, Tel3E01G542100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG048860, gene_TRIDC3BG055100 |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G168700.1, TraesCS2B02G195000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb049930_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33905 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g963 |