Basic Information
Locus ID:
CH01.1631
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 12979269 | 12983353 | + | CH01.1631 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 69,916.02 Da | 48.16 | 91.51 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 4.94526E-46 | - |
| Pfam | PF03000 | NPH3 family | 211 | 468 | 2.6E-86 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 116 | 6.2E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 2.04E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 119 | 1.1E-12 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 11.129961 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 492 | 86.522461 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 594 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 573 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 8.14E-202 |
| RefSeq | XP_025793575.1 | BTB/POZ domain-containing protein NPY4-like [Panicum hallii] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 7.83E-201 | |
| TrEMBL | A0A2T7C3T9 | NPH3 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G162200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology