Basic Information
Locus ID:
CH01.1561
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 12329572 | 12333077 | - | CH01.1561 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 47,039.15 Da | 43.94 | 72.92 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 359 | 396 | 7.4E-7 | IPR026960 |
| Pfam | PF13639 | Ring finger domain | 271 | 312 | 1.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 317 | 4.8E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 240 | 318 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 271 | 311 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 271 | 312 | 12.312242 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15820.1 | RING/U-box superfamily protein. | 2.93E-27 |
| RefSeq | XP_039788541.1 | E3 ubiquitin-protein ligase SIRP1-like [Panicum virgatum] | 5.34E-136 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 6.58E-20 | |
| TrEMBL | A0A8T0X0V7 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG087200 PE=4 SV=1 | 1.21E-134 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH07.665, CH01.1561 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0104560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0574800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021194 |
| Poaceae | Oryza coarctata | 2 | Oco03G005240, Oco04G004690 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g09820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G069000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202201 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G033510, Chr15G024830 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG029770 |
| Poaceae | Triticum aestivum | 2 | TraesCS6B02G198800.1, TraesCS6D02G160300.1 |
| Poaceae | Zea mays | 1 | Zm00001eb206330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44122 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15100 |