Basic Information
Locus ID:
CH01.1549
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 12198039 | 12200103 | - | CH01.1549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 70,615.00 Da | 39.84 | 90.10 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 201 | 244 | 4.87024E-7 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 418 | 586 | 1.7E-31 | IPR001245 |
| Pfam | PF01476 | LysM domain | 202 | 245 | 1.5E-6 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 399 | 587 | 7.12E-50 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 200 | 245 | 7.19E-6 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 348 | 453 | 9.5E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 454 | 662 | 2.8E-41 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 200 | 254 | 2.2E-9 | IPR036779 |
| SMART | SM00257 | LysM_2 | 201 | 245 | 4.2E-6 | IPR018392 |
| SMART | SM00257 | LysM_2 | 133 | 181 | 1.1 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 362 | 673 | 26.025654 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 200 | 244 | 11.43077 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 278 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 1.48E-140 |
| RefSeq | XP_039781255.1 | protein LYK5-like [Panicum virgatum] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 1.42E-139 | |
| TrEMBL | A0A3L6RXM9 | Protein LYK5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology