Basic Information
Locus ID:
CH01.1463
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 11340804 | 11344691 | - | CH01.1463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 63,439.02 Da | 53.82 | 77.40 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 3 | 65 | 1.8E-11 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 73 | 139 | 1.9E-16 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 147 | 218 | 8.9E-28 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 140 | 220 | 1.2E-29 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 66 | 1.33E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 66 | 140 | 9.44E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 143 | 246 | 8.2E-37 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 65 | 142 | 3.2E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 64 | 3.0E-14 | - |
| SMART | SM00213 | ubq_7 | 1 | 65 | 6.1E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 145 | 216 | 5.7E-28 | IPR000626 |
| SMART | SM00213 | ubq_7 | 66 | 138 | 1.1E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 66 | 10.941348 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 145 | 220 | 26.55431 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 66 | 137 | 15.601284 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 155 | 175 | 5.0E-26 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 176 | 196 | 5.0E-26 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 197 | 218 | 5.0E-26 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 1.17E-72 |
| RefSeq | XP_039841148.1 | polyubiquitin-like isoform X3 [Panicum virgatum] | 4.93E-121 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 1.13E-71 | |
| TrEMBL | A0A8T0XK55 | Polyubiquitin OS=Panicum virgatum OX=38727 GN=PVAP13_1KG245100 PE=4 SV=1 | 4.83E-132 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||