Basic Information
Locus ID:
CH01.1462
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 11328339 | 11331929 | - | CH01.1462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 28,457.15 Da | 45.96 | 93.56 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 39 | 98 | 2.3E-11 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 183 | 254 | 4.5E-27 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 110 | 174 | 5.7E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 176 | 255 | 1.08E-29 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 23 | 99 | 9.37E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 101 | 175 | 9.04E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 34 | 99 | 1.8E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 178 | 256 | 9.2E-36 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 100 | 177 | 3.0E-22 | - |
| SMART | SM00213 | ubq_7 | 102 | 174 | 2.4E-12 | IPR000626 |
| SMART | SM00213 | ubq_7 | 37 | 101 | 7.5E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 181 | 252 | 5.6E-25 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 102 | 173 | 14.948022 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 37 | 98 | 11.376856 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 181 | 256 | 26.35833 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 207 | 232 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 212 | 232 | 4.9E-29 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 233 | 254 | 4.9E-29 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 191 | 211 | 4.9E-29 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 2.29E-77 |
| RefSeq | XP_039841136.1 | polyubiquitin-like isoform X1 [Panicum virgatum] | 2.18E-130 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 2.2E-76 | |
| TrEMBL | A0A8T0XK55 | Polyubiquitin OS=Panicum virgatum OX=38727 GN=PVAP13_1KG245100 PE=4 SV=1 | 3.57E-137 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||