Basic Information
Locus ID:
CH01.1460
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 11310344 | 11312617 | - | CH01.1460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 29,186.38 Da | 48.74 | 107.80 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 147 | 218 | 3.6E-27 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 73 | 138 | 1.0E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 62 | 2.4E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 65 | 8.33E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 63 | 138 | 1.41E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 140 | 218 | 9.09E-29 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 143 | 229 | 3.6E-35 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 63 | 5.1E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 64 | 142 | 3.0E-23 | - |
| SMART | SM00213 | ubq_7 | 66 | 138 | 3.3E-13 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 65 | 7.5E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 145 | 216 | 7.7E-25 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 62 | 11.376856 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 145 | 220 | 24.442095 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 66 | 137 | 14.948022 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 171 | 196 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 197 | 218 | 1.7E-28 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 176 | 196 | 1.7E-28 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 155 | 175 | 1.7E-28 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 5.9E-77 |
| RefSeq | XP_039841148.1 | polyubiquitin-like isoform X3 [Panicum virgatum] | 3.92E-129 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 5.68E-76 | |
| TrEMBL | A0A8T0XK55 | Polyubiquitin OS=Panicum virgatum OX=38727 GN=PVAP13_1KG245100 PE=4 SV=1 | 5.48E-136 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||