Basic Information
Locus ID:
CH01.1459
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 11304173 | 11307463 | - | CH01.1459 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 59,991.59 Da | 52.54 | 69.94 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 193 | 256 | 1.0E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 274 | 316 | 2.12E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 263 | 3.3E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 205 | 3.06E-14 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 252 | 501 | 1.1E-51 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 208 | 2.2E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 193 | 256 | 1.2E-15 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 260 | 328 | 0.76 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 172 | 9.509172 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 119 | 332 | 41.041809 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34370.1 | RING/U-box superfamily protein. | 8.48E-155 |
| RefSeq | XP_034571309.1 | probable E3 ubiquitin-protein ligase ARI1 [Setaria viridis] | 0 |
| Q949V6 | Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana OX=3702 GN=ARI1 PE=2 SV=1 | 8.17E-154 | |
| TrEMBL | A0A4U6SWG0 | RBR-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_9G163100v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH01.1188, AH01.1189, CH01.1458, CH01.1459, CH04.2197 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0225740, gene-QOZ80_3AG0225750 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0341310.1, HORVU.MOREX.r3.4HG0341330.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062996, gene-QYE76_062997 |
| Poaceae | Oryza coarctata | 3 | Oco05G017350, Oco05G018400, Oco05G018410 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g42760.1, LOC_Os03g42780.1, LOC_Os03g42790.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G150500, gene-BS78_01G150600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104418, Pt_Chr0104419 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G009910 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G115400, Tel4E01G115800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038370, gene_TRIDC4BG011020 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G243200.1, TraesCS4B02G071700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb218920_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20372, nbis-gene-20381, nbis-gene-39694 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3254, Zma_g922 |