Basic Information
Locus ID:
CH01.1413
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 10903243 | 10903764 | - | CH01.1413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 18,420.84 Da | 78.34 | 79.65 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 99 | 144 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 151 | 1.34E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 76 | 150 | 1.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 100 | 143 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 100 | 144 | 11.618851 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 95 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 6.27E-12 |
| RefSeq | XP_039780523.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 1.94E-76 |
| Q84W40 | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2 | 6.23E-11 | |
| TrEMBL | A0A8T0NDI1 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG068300 PE=4 SV=1 | 4.38E-75 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH01.1316, AH01.1317, BH01.1369, BH01.1370, BH01.1371 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0223860, gene-QOZ80_3AG0223890 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0507880.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_063340, gene-QYE76_063341, gene-QYE76_063342 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os03g44636.1, LOC_Os03g44642.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G142000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200097 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G009170, Chr04G025050 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G592800, Tel5E01G592900, Tel5E01G593100 |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G372500.1.cds1, TraesCS5A02G372600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb050250_P001, Zm00001eb050260_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3168, Zma_g850 |