Basic Information
Locus ID:
CH01.1350
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 10348193 | 10352288 | + | CH01.1350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 73,626.46 Da | 54.81 | 57.37 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 258 | 299 | 3.58642E-12 | - |
| Pfam | PF08783 | DWNN domain | 4 | 81 | 1.0E-17 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 168 | 186 | 1.9E-7 | IPR025829 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 322 | 2.33E-9 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 166 | 214 | 6.75E-8 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 164 | 191 | 6.4E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 333 | 1.8E-10 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 192 | 235 | 2.1E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 3.3E-16 | - |
| SMART | SM01180 | DWNN_2 | 4 | 82 | 5.0E-26 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 198 | 214 | 0.047 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 172 | 188 | 0.073 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 82 | 14.661103 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 199 | 213 | 8.581337 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 590 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 372 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 5.2E-45 |
| RefSeq | XP_034572689.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 7.4E-43 | |
| TrEMBL | A0A3L6TPL0 | DWNN domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G33390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology