Basic Information
Locus ID:
CH01.1256
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 9596485 | 9599637 | - | CH01.1256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 42,707.29 Da | 39.29 | 91.03 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 219 | 349 | 7.09529E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 232 | 340 | 1.9E-31 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 61 | 153 | 3.2E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 104 | 362 | 4.92E-64 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 72 | 114 | 7.79E-6 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 155 | 214 | 6.3E-14 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 22 | 154 | 2.8E-31 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 215 | 379 | 1.4E-60 | IPR027417 |
| SMART | SM00487 | ultradead3 | 55 | 222 | 5.2E-32 | IPR014001 |
| SMART | SM00490 | helicmild6 | 259 | 340 | 1.6E-34 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 36 | 64 | 10.872815 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 218 | 379 | 27.269588 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 207 | 15.37553 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 8.04E-226 |
| RefSeq | XP_002454843.1 | DEAD-box ATP-dependent RNA helicase 2 [Sorghum bicolor] | 3.19E-263 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 8.17E-249 | |
| TrEMBL | C5XWR4 | DEAD-box ATP-dependent RNA helicase 2 OS=Sorghum bicolor OX=4558 GN=SORBI_3004G356900 PE=3 SV=1 | 7.21E-262 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology