Basic Information
Locus ID:
CH01.1242
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 9497927 | 9498613 | - | CH01.1242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 24,462.43 Da | 46.68 | 69.87 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 22 | 66 | 1.46817E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 23 | 69 | 2.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 77 | 8.08E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 80 | 3.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 24 | 64 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 65 | 13.226928 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 39 | 48 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 94 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 4.63E-74 |
| RefSeq | XP_039781027.1 | E3 ubiquitin-protein ligase RNF5-like [Panicum virgatum] | 2.06E-165 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 8.09E-30 | |
| TrEMBL | A0A8T0NAE9 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_9KG050900 PE=4 SV=1 | 4.67E-164 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology