Basic Information
Locus ID:
CH01.1220
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
protein heterodimerization activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 9289263 | 9293745 | - | CH01.1220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 95,374.61 Da | 46.23 | 83.45 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 15 | 55 | 7.8E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 420 | 477 | 7.59E-10 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 60 | 3.53E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 54 | 2.0E-7 | - |
| SMART | SM00256 | fbox_2 | 429 | 470 | 1.9 | IPR001810 |
| SMART | SM00256 | fbox_2 | 17 | 58 | 5.3E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 58 | 8.702637 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039812140.1 | uncharacterized protein LOC120675117 [Panicum virgatum] | 1.32E-185 |
| TrEMBL | A0A2T7DC38 | F-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G030100 PE=4 SV=1 | 5.47E-193 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 15 | AH02.4407, AH02.4459, BH01.1168, BH02.4439, BH02.4440 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0045470, gene-QOZ80_1AG0045480 ... |
| Poaceae | Oryza coarctata | 4 | Oco01G002080, Oco02G002070, Oco02G002100, Oco02G003320 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g05880.1, LOC_Os01g05890.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_01G264100, gene-BS78_03G398000, gene-BS78_K095000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205593, Pt_Chr0205600, Pt_Chr0205696 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G830700 |
| Poaceae | Triticum aestivum | 2 | TraesCS7B02G392200.1.cds1, TraesCSU02G244400.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb298720_P001, Zm00001eb298750_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10900 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9325 |