Basic Information
Locus ID:
CH01.1205
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 9129974 | 9136452 | + | CH01.1205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.47 | 132,057.09 Da | 75.34 | 55.65 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 329 | 366 | 6.48421E-6 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 321 | 367 | 9.59E-6 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 319 | 378 | 4.4E-5 | IPR008974 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 851 | 881 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 998 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 972 | 1044 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 316 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | NP_001304752.1 | EIN3-binding F-box protein 2-like [Zea mays] | 1.01E-16 |
| TrEMBL | A0A3L6F4X2 | EIN3-binding F-box protein 1 OS=Zea mays OX=4577 GN=EBF1_4 PE=4 SV=1 | 3.29E-16 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH02.1701, AH03.1663, AH03.1891, AH05.2284, AH08.1290 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109200_P001, Zm00001eb273310_P001 |