Basic Information
Locus ID:
CH01.12
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA polymerase subunit 8
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 138564 | 142404 | + | CH01.12 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 61,777.39 Da | 44.76 | 70.16 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03870 | RNA polymerase Rpb8 | 399 | 491 | 3.4E-29 | IPR005570 |
| Pfam | PF07893 | Protein of unknown function (DUF1668) | 4 | 287 | 1.0E-77 | IPR012871 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 394 | 491 | 1.1E-25 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 397 | 540 | 4.3E-33 | - |
| SMART | SM00658 | rpol8neu | 393 | 510 | 4.0E-25 | IPR005570 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 538 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54250.1 | RNA polymerase Rpb8. One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II and V; homologous to budding yeast RPB8. Probably redundant with At3g59600. | 2.26E-34 |
| RefSeq | XP_025821357.1 | uncharacterized protein LOC112897297 [Panicum hallii] | 1.86E-66 |
| O81097 | DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702 GN=NRPB8A PE=1 SV=1 | 2.18E-33 | |
| TrEMBL | A0A835FKS4 | Uncharacterized protein OS=Digitaria exilis OX=1010633 GN=HU200_009514 PE=4 SV=1 | 5.43E-160 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology