Basic Information
Locus ID:
CH01.1101
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 8331985 | 8333331 | - | CH01.1101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 47,527.41 Da | 53.57 | 57.41 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 212 | 247 | 1.82953E-9 | - |
| Pfam | PF13696 | Zinc knuckle | 159 | 179 | 3.8E-10 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 3 | 81 | 9.1E-16 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 279 | 1.18E-9 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 156 | 202 | 1.3E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 84 | 1.5E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 294 | 2.0E-10 | IPR013083 |
| SMART | SM01180 | DWNN_2 | 3 | 82 | 8.9E-27 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 82 | 13.307441 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 352 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 1.11E-38 |
| RefSeq | XP_034570947.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 3.46E-196 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 2.72E-37 | |
| TrEMBL | A0A4U6T3R5 | DWNN domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G417500v2 PE=4 SV=1 | 2.7E-194 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology