Basic Information
Locus ID:
CH01.1086
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 8260085 | 8261341 | + | CH01.1086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 47,085.59 Da | 59.99 | 84.00 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 15 | 50 | 6.6E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 54 | 2.22E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 55 | 4.4E-10 | - |
| SMART | SM00256 | fbox_2 | 19 | 59 | 2.4E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 60 | 10.000863 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024313675.1 | uncharacterized protein LOC106865926 [Brachypodium distachyon] | 3.8E-12 |
| TrEMBL | M7Y6V6 | F-box domain-containing protein OS=Triticum urartu OX=4572 GN=TRIUR3_27572 PE=4 SV=1 | 2.09E-181 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.909, CH01.1086 |
| Poaceae | Oryza coarctata | 1 | Oco05G021200 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49690.1 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr0G019060, Chr0G019110, Chr0G019180, Chr0G020660 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G278500 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G119500.1, TraesCS6B02G147800.1.cds1 |