Basic Information
Locus ID:
CH01.1062
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 8026002 | 8058574 | - | CH01.1062 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 43,070.50 Da | 42.94 | 67.68 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 269 | 296 | 1.9E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 302 | 328 | 1.1E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 262 | 298 | 5.1E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 299 | 330 | 1.02E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 330 | 363 | 8.63E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 330 | 363 | 8.0E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 297 | 329 | 1.7E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 262 | 296 | 1.2E-10 | - |
| SMART | SM00547 | zf_4 | 302 | 326 | 4.8E-8 | IPR001876 |
| SMART | SM00547 | zf_4 | 271 | 295 | 8.2E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 335 | 359 | 0.078 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 300 | 329 | 10.116323 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 333 | 362 | 9.382329 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 269 | 298 | 9.856602 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 337 | 356 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 273 | 292 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 304 | 323 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 388 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 9.3E-45 |
| RefSeq | XP_025796160.1 | zinc finger protein VAR3, chloroplastic-like [Panicum hallii] | 5.82E-159 |
| TrEMBL | A0A2T7C228 | Zinc finger protein VAR3, chloroplastic OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G116200 PE=4 SV=1 | 4.15E-159 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology