Basic Information
Locus ID:
CH01.1038
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 7868773 | 7870042 | - | CH01.1038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 14,220.04 Da | 59.62 | 52.36 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10507 | Zn-ribbon_RPA12 | 78 | 122 | 7.29301E-22 | IPR034004 |
| Pfam | PF01096 | Transcription factor S-II (TFIIS) | 85 | 122 | 4.4E-17 | IPR001222 |
| SUPERFAMILY | SSF57783 | Zinc beta-ribbon | 78 | 123 | 3.46E-17 | - |
| Gene3D | G3DSA:2.20.25.10 | - | 69 | 123 | 2.1E-18 | - |
| SMART | SM00440 | Cys4_2 | 84 | 123 | 4.5E-13 | IPR001222 |
| PIRSF | PIRSF005586 | RNApol_RpoM | 9 | 123 | 6.6E-23 | IPR012164 |
| ProSiteProfiles | PS51133 | Zinc finger TFIIS-type profile. | 82 | 122 | 13.189512 | IPR001222 |
| ProSitePatterns | PS00466 | Zinc finger TFIIS-type signature. | 86 | 121 | - | IPR001222 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25940.1 | TFIIB zinc-binding protein. | 1.36E-32 |
| RefSeq | XP_034576786.1 | DNA-directed RNA polymerase I subunit RPA12-like [Setaria viridis] | 9.16E-75 |
| Q1RMP0 | DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2 SV=1 | 1.5E-15 | |
| TrEMBL | A0A835B1B4 | DNA-directed RNA polymerase subunit OS=Digitaria exilis OX=1010633 GN=HU200_048258 PE=3 SV=1 | 2.0E-73 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10537, jg6365 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19071 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036204 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg23706, Sbi_jg39950, Sbi_jg55281 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12491, Seu_jg14385 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014064 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12179, Sgl17552 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016600, gene:ENSEOMG00000032884 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0021320, CQ.Regalona.r1.1BG0003170 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049200 |
| Apiaceae | Apium graveolens | 1 | Ag10G00372 |
| Arecaceae | Cocos nucifera | 2 | COCNU_13G006510, scaffold003371G000060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695639, gene-LOC113463573 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2404.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G11177 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G20065.2, AT3G25940.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009132m.g.v1.0, Thhalv10019327m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g028950.2N, BniB04g034790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0859 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0940 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08320 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0268s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g11160 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1589 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002569 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32128 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.851, BH01.994, CH01.1038 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0219050, gene-QOZ80_3BG0264300 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062437, gene-QYE76_062880 |
| Poaceae | Oryza coarctata | 2 | Oco05G021660, Oco06G022430 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g50380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G106900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105040 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G026950, Chr12G030390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G082700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG073740, gene_TRIDC3AG017340 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G267900.1, TraesCS4B02G046500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb054840_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15918 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2956 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.2891, evm.TU.LG02.2892, evm.TU.LG23.1094 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g13510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.48 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24237 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18172 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14096 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.282 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018855 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15000 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21456 |
| Salicaceae | Populus euphratica | 1 | populus_peu15678 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615336 |
| Solanaceae | Solanum chilense | 1 | SOLCI005534000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015999 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1117 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2891 |
| Zosteraceae | Zostera marina | 1 | Zosma03g26290.v3.1 |