Basic Information
Locus ID:
CH01.1034
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 7828416 | 7838354 | - | CH01.1034 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 89,204.58 Da | 57.33 | 74.96 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 677 | 773 | 3.6E-14 | IPR000608 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 266 | 291 | 7.0E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 310 | 333 | 2.5E-6 | IPR001876 |
| SUPERFAMILY | SSF54495 | UBC-like | 645 | 778 | 7.39E-37 | IPR016135 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 305 | 336 | 7.85E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 259 | 290 | 2.75E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 302 | 341 | 2.4E-12 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 638 | 780 | 2.5E-41 | IPR016135 |
| Gene3D | G3DSA:4.10.1060.10 | - | 258 | 294 | 8.8E-13 | - |
| SMART | SM00547 | zf_4 | 312 | 336 | 1.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 268 | 292 | 1.9E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 345 | 369 | 0.83 | IPR001876 |
| SMART | SM00212 | ubc_7 | 650 | 794 | 2.4E-11 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 647 | 795 | 34.433331 | IPR000608 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 266 | 295 | 9.788849 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 343 | 372 | 8.738674 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 310 | 339 | 9.393621 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 314 | 333 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 347 | 366 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 270 | 289 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.2 | Ran BP2/NZF zinc finger-like superfamily protein. | 3.25E-137 |
| RefSeq | XP_025797736.1 | uncharacterized protein LOC112877609 [Panicum hallii] | 0 |
| Q93YP0 | Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1 | 5.83E-76 | |
| TrEMBL | A0A3L6EI61 | Ubiquitin-conjugating enzyme E2 variant 1A OS=Zea mays OX=4577 GN=UEV1A_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology