Basic Information
Locus ID:
CH01.1018
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 7711998 | 7715537 | + | CH01.1018 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 30,862.38 Da | 38.81 | 86.93 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 69 | 4.2E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 2 | 82 | 1.49E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 74 | 5.7E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 1.5E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.28118 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 3.99E-87 |
| RefSeq | XP_004981985.1 | binding partner of ACD11 1 isoform X2 [Setaria italica] | 6.49E-185 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 5.66E-62 | |
| TrEMBL | A0A1E5WIY1 | Binding partner of ACD11 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0001652 PE=4 SV=1 | 1.37E-183 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology