Basic Information
Locus ID:
CH01.101
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Calreticulin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 737383 | 747196 | - | CH01.101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 104,255.82 Da | 39.88 | 74.86 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01557 | Fumarylacetoacetate (FAA) hydrolase family | 743 | 946 | 6.4E-53 | IPR011234 |
| Pfam | PF00262 | Calreticulin family | 289 | 521 | 3.5E-57 | IPR001580 |
| SUPERFAMILY | SSF63887 | P-domain of calnexin/calreticulin | 466 | 567 | 1.06E-35 | IPR009033 |
| SUPERFAMILY | SSF56529 | FAH | 740 | 946 | 6.93E-68 | IPR036663 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 283 | 482 | 1.06E-73 | IPR013320 |
| Gene3D | G3DSA:2.10.250.10 | Calreticulin/calnexin, P domain | 470 | 564 | 6.7E-32 | IPR009033 |
| Gene3D | G3DSA:3.90.850.10 | - | 727 | 950 | 2.7E-75 | IPR036663 |
| Gene3D | G3DSA:2.60.120.200 | - | 286 | 649 | 1.2E-95 | - |
| ProSitePatterns | PS00805 | Calreticulin family repeated motif signature. | 508 | 520 | - | IPR018124 |
| ProSitePatterns | PS00804 | Calreticulin family signature 2. | 395 | 403 | - | IPR018124 |
| ProSitePatterns | PS00803 | Calreticulin family signature 1. | 363 | 378 | - | IPR018124 |
| PRINTS | PR00626 | Calreticulin signature | 587 | 607 | 1.7E-47 | IPR001580 |
| PRINTS | PR00626 | Calreticulin signature | 542 | 561 | 1.7E-47 | IPR001580 |
| PRINTS | PR00626 | Calreticulin signature | 480 | 493 | 1.7E-47 | IPR001580 |
| PRINTS | PR00626 | Calreticulin signature | 508 | 530 | 1.7E-47 | IPR001580 |
| PRINTS | PR00626 | Calreticulin signature | 391 | 407 | 1.7E-47 | IPR001580 |
| PRINTS | PR00626 | Calreticulin signature | 365 | 383 | 1.7E-47 | IPR001580 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| Coils | Coil | Coil | 625 | 645 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56340.2 | calreticulin 1a. Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. | 2.65E-163 |
| RefSeq | XP_034575663.1 | calreticulin-like [Setaria viridis] | 7.53E-207 |
| Q9SLY8 | Calreticulin OS=Oryza sativa subsp. japonica OX=39947 GN=CRO1 PE=1 SV=2 | 1.07E-173 | |
| TrEMBL | A0A4U6SPJ0 | Calreticulin OS=Setaria viridis OX=4556 GN=SEVIR_9G023300v2 PE=3 SV=1 | 1.7E-205 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11243, jg32391, jg5660 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18887 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah021214, Ah028636 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1915, Sbi_jg34609, Sbi_jg59953, Sbi_jg62895 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg23966, Seu_jg2852 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011677, GOSA_00025792 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl03307, Sgl08379, Sgl73533, Sgl77062 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006871, gene:ENSEOMG00000012550 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0016830, CQ.Regalona.r1.3AG0016840 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234110 |
| Apiaceae | Apium graveolens | 2 | Ag5G02408, Ag8G01726 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G002590 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721684, gene-LOC120103806 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1185.V1.1, AsparagusV1_Unassigned.1098.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G26877 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G16700.1, AT4G15940.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10021471m.g.v1.0, Thhalv10026185m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g14970.v2.2, Sp7g14390.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB07g021530.2N, BniB07g021540.2N, BniB07g021550.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1114 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1210 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17590 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0009s00002.v1.0, Dusal.0063s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g30940, gene.Thate06g04270 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1279 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00703 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.476, BH01.263, CH01.101 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0254710 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0342690.1, HORVU.MOREX.r3.5HG0528510.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_060485, gene-QYE76_063752 |
| Poaceae | Oryza coarctata | 3 | Oco05G027950, Oco05G028150, Oco06G028920 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g30800.1, LOC_Os03g61330.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G022000, gene-BS78_01G022100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104325, Pt_Chr0104336, Pt_Chr0105979, Pt_Chr0108198 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000980, Chr04G031990, Chr07G030980, Chr12G032610 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G127700, Tel5E01G782400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG037280, gene_TRIDC4AG054620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G236400.1, TraesCS4A02G366200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb053490_P001, Zm00001eb063500_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15574, nbis-gene-16661 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g114, Zma_g2437 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.951, evm.TU.LG21.613 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g31860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.583 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1365, nbisL1-mrna-16106 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15875, nbisL1-mrna-2712 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-478, nbisL1-mrna-6305 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.334, evm.TU.utg000019l.852 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006982, Maker00012518 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12190, nbisL1-mrna-13743 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3659 |
| Salicaceae | Populus euphratica | 1 | populus_peu22247 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626770 |
| Solanaceae | Solanum chilense | 1 | SOLCI000865800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009288 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9439 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1664 |
| Zosteraceae | Zostera marina | 1 | Zosma01g00290.v3.1 |