Basic Information
Locus ID:
BniS05187g230.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U3 small nucleolar RNA-associated protein 15 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| utg5187 | 80550 | 82139 | - | BniS05187g230.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 59,025.63 Da | 44.00 | 87.98 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09384 | UTP15 C terminal | 381 | 522 | 2.4E-34 | IPR018983 |
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 165 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 208 | 0.0037 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 48 | 334 | 5.33E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 144 | 367 | 2.9E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 21 | 143 | 4.3E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 168 | 208 | 4.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 84 | 122 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 125 | 165 | 0.095 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 248 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 297 | 0.058 | IPR001680 |
| SMART | SM00320 | WD40_4 | 37 | 81 | 97.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 132 | 174 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 175 | 217 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 175 | 208 | 9.230148 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 235 | 249 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 152 | 166 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 195 | 209 | 2.1E-5 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47990.1 | transducin family protein / WD-40 repeat family protein. Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant. | 0 |
| RefSeq | XP_006397992.1 | protein SLOW WALKER 1 [Eutrema salsugineum] | 0 |
| O82266 | Protein SLOW WALKER 1 OS=Arabidopsis thaliana OX=3702 GN=SWA1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W9N3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008729 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg37905, jg37908 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11643 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022014 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1521, Sbi_jg35029 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3224 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011943 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73790, Sgl77295 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014984, gene:ENSEOMG00000018428 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0008420, CQ.Regalona.r1.2BG0009330 |
| Apiaceae | Apium graveolens | 1 | Ag11G04616 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G005230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709103 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.686.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G26437, Ftri12G11476 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G47990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001392m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g29910.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g000180.2N, BniS05187g230.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g14080 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0343s00018.v1.0, Dusal.0343s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g27080, gene.Thate06g05810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2599 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.251 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008191 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.624, BH03.754, CH03.847 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0249400, gene-QOZ80_3BG0278810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0747280.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_000111, gene-QYE76_042092, gene-QYE76_042973 |
| Poaceae | Oryza coarctata | 2 | Oco13G004000, Oco14G004460 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g12320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G219000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G035260, Chr04G011990, Chr12G004340, Chr13G012160 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G698200, Tel7E01G931100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG074480, gene_TRIDC7BG070780 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G534500.1.cds1, TraesCS7B02G451600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb303580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49982 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3585 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1518, evm.TU.LG22.1193 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g29740, gene.Posoc04g16550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.921 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11422 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7727 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11541 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.97 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013836 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20729 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7537 |
| Salicaceae | Populus euphratica | 3 | populus_peu01093, populus_peu27190, populus_peu37847 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609293 |
| Solanaceae | Solanum chilense | 1 | SOLCI004455100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019796 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11921 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2052 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30380.v3.1 |