Basic Information
Locus ID:
BniS00512g420.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
positive regulation of bicellular tight junction assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| utg512 | 203988 | 205580 | + | BniS00512g420.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 52,722.40 Da | 43.46 | 100.11 | -0.10 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48400.2 | - | 0 |
| RefSeq | XP_018441440.1 | PREDICTED: F-box/LRR-repeat protein At1g48400-like [Raphanus sativus] | 0 |
| Q56XW8 | F-box/LRR-repeat protein At1g48400 OS=Arabidopsis thaliana OX=3702 GN=At1g48400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6J0K0D4 | F-box/LRR-repeat protein At1g48400-like OS=Raphanus sativus OX=3726 GN=LOC108813398 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G21990.1, AT1G47920.1, AT1G48390.1, AT1G48400.1 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012238m.g.v1.0, Thhalv10013291m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29200.v2.2 |
| Brassicaceae | Brassica nigra | 18 | BniB01g014250.2N, BniB02g013580.2N, BniB02g052700.2N ... |