Basic Information
Locus ID:
BniS00512g350.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| utg512 | 136936 | 138661 | - | BniS00512g350.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 49,325.52 Da | 48.65 | 63.51 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 326 | 408 | 1.1E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 326 | 411 | 1.2E-28 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 108 | - | - |
| Coils | Coil | Coil | 368 | 388 | - | - |
| Coils | Coil | Coil | 315 | 352 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_009142545.1 | hepatoma-derived growth factor-related protein 2 [Brassica rapa] | 0 |
| TrEMBL | A0A8X7W9U5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008784 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology