Basic Information
Locus ID:
BniS00512g080.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| utg512 | 34974 | 35645 | + | BniS00512g080.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 24,744.13 Da | 70.22 | 92.69 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 104 | 147 | 1.11237E-17 | - |
| Pfam | PF13639 | Ring finger domain | 104 | 147 | 5.8E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 156 | 2.1E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 155 | 7.2E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 105 | 146 | 2.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 105 | 147 | 13.330199 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 182 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_018433205.1 | PREDICTED: RING-H2 finger protein ATL5 [Raphanus sativus] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0JC72 | RING-H2 finger protein ATL5 OS=Raphanus sativus OX=3726 GN=LOC108805765 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology