Basic Information
Locus ID:
BniB08g077050.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Protein ROOT PRIMORDIUM DEFECTIVE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 67258201 | 67258689 | + | BniB08g077050.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 18,246.30 Da | 27.07 | 83.64 | 0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63095.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. Encodes a Protease inhibitor/seed storage/LTP family protein | 0 |
| RefSeq | XP_013603813.1 | PREDICTED: histone-lysine N-methyltransferase set1-like [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A397Y4W7 | AAI domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_I04364 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35279 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6230 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029542 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g162920 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16126, Sbi_jg56772 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24627 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013686 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72020, Sgl75590 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000040658 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0015400 |
| Apiaceae | Apium graveolens | 2 | Ag2G02405, Ag9G02166 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696549 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.858.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G20558, Ftri9G10902 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G63095.1 |
| Brassicaceae | Brassica nigra | 3 | BniB06g052040.2N, BniB06g061220.2N, BniB08g077050.2N |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g14120, gene.Cymno14g10330 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6301 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3586, AH03.3912, BH01.3933, BH03.4202, CH01.4197 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3BG0279340, gene-QOZ80_7AG0579840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0371980.1.CDS1 |
| Poaceae | Oryza coarctata | 4 | Oco05G013880, Oco06G012450, Oco13G014490, Oco14G015380 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g24300.1, LOC_Os07g46210.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G349500, gene-BS78_02G373600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305022 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G011680, Chr07G011090, Chr0G021180, Chr12G004580 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG016750, gene_TRIDC2BG020410 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G151600.1.cds1, TraesCS4B02G155100.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb017420_P001, Zm00001eb329500_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1530, nbis-gene-3262, nbis-gene-33143 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g1175, Zma_g3614, Zma_g5693, Zma_g6986 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.554 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g20800 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.955, evm.TU.Scaffold_5_RagTag.956 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11384, nbisL1-mrna-11385, nbisL1-mrna-21320 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7694, nbisL1-mrna-7695 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11578, nbisL1-mrna-18406 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000003l.189, add.evm.TU.utg000006l.110 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009625, Maker00013693 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17312, nbisL1-mrna-20717, nbisL1-mrna-20718 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5154, nbisL1-mrna-7581 |
| Salicaceae | Populus euphratica | 3 | populus_peu27154, populus_peu27155, populus_peu31142 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618160 |
| Solanaceae | Solanum chilense | 2 | SOLCI004281900, SOLCI007033100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008782, gene-LOC107029223 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16594 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2028 |