Basic Information
Locus ID:
BniB08g076720.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
ATMRK1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 67087796 | 67091731 | - | BniB08g076720.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 77,377.10 Da | 35.74 | 84.54 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 92 | 367 | 1.07307E-107 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 87 | 367 | 9.4E-61 | IPR001245 |
| Pfam | PF02574 | Homocysteine S-methyltransferase | 396 | 702 | 3.1E-74 | IPR003726 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 55 | 367 | 1.78E-77 | IPR011009 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 386 | 705 | 2.62E-79 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 379 | 703 | 4.0E-98 | IPR036589 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 74 | 166 | 1.4E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 180 | 371 | 2.9E-58 | - |
| SMART | SM00220 | serkin_6 | 86 | 367 | 7.2E-61 | IPR000719 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 383 | 703 | 46.389397 | IPR003726 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 86 | 372 | 40.329262 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 234 | 246 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 228 | 246 | 2.8E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 294 | 316 | 2.8E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 190 | 203 | 2.8E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 338 | 360 | 2.8E-14 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63260.1 | Protein kinase superfamily protein. protein kinase, similar to mammal mixed-lineage kinase and Raf protein kinase | 0 |
| RefSeq | XP_048597365.1 | serine/threonine-protein kinase STY13-like [Brassica napus] | 0 |
| Q4VNK0 | Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica OX=36774 GN=SMT PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P5Y6T9 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T40913Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology