Basic Information
Locus ID:
BniB08g075930.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is Ring U-Box superfamily protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 66622189 | 66623526 | - | BniB08g075930.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 41,830.57 Da | 56.81 | 82.06 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 320 | 363 | 2.87493E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 31 | 97 | 8.1E-18 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 191 | 226 | 8.3E-6 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 321 | 363 | 1.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 366 | 3.18E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 368 | 1.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 362 | 2.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 363 | 12.341748 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013709602.1 | RING-H2 finger protein ATL22 [Brassica napus] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7Q478 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_080078 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology