Basic Information
Locus ID:
BniB08g075580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
BRH1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 66411838 | 66412356 | - | BniB08g075580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 20,251.99 Da | 62.94 | 83.78 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 94 | 137 | 5.1035E-14 | - |
| Pfam | PF13639 | Ring finger domain | 93 | 137 | 2.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 143 | 8.52E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 144 | 2.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 94 | 136 | 6.3E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 93 | 137 | 0.0056 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 137 | 12.430266 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_009116810.1 | E3 ubiquitin-protein ligase RHA1B [Brassica rapa] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7Q1F4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_080156 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology